Skip to main content

Advertisement

Log in

A population genetic evaluation of ecological restoration with the case study on Cyclobalanopsis myrsinaefolia (Fagaceae)

  • Published:
Plant Ecology Aims and scope Submit manuscript

Abstract

The ultimate goal of ecological restoration is to create a self-sustaining ecosystem that is resilient to perturbation without further assistance. Genetic variation is a prerequisite for evolutionary response to environmental changes. However, few studies have evaluated the genetic structure of restored populations of dominant plants. In this study, we compared genetic variation of the restored populations with the natural ones in Cyclobalanopsis myrsinaefolia, a dominant species of evergreen broadleaved forest. Using eight polymorphic microsatellite loci, we analyzed samples collected from restored populations and the donor population as well as two other natural populations. We compared the genetic diversity of restored and natural populations. Differences in genetic composition were evaluated using measurements of genetic differentiation and assignment tests. The mean number of alleles per locus was 4.65. Three parameters (A, A R, and expected heterozygosity) of genetic variation were found to be lower, but not significantly, in the restored populations than they were in the natural populations, indicating a founder effect during the restoration. Significant but low F ST (0.061) was observed over all loci, indicating high gene flow among populations, as expected from its wind-pollination. Differentiation between the two restored populations was smallest. However, differences between the donor population and the restored populations were higher than those between other natural populations and the restored populations. Only 13.5% and 25.7% individuals in the two restored populations were assigned to the donor population, but 54.1 and 40% were assigned to another natural population. The genetic variation of the donor population was lowest, and geographic distances from the restoration sites to the donor site were much higher than the other natural populations, indicating that the present donor likely was not the best donor for these ecological restoration efforts. However, no deleterious consequences might be observed in restored populations due to high observed heterozygosity and high gene flow. This study demonstrates that during the restoration process, genetic structures of the restored populations may be biased from the donor population. The results also highlight population genetic knowledge, especially of gene flow-limited species, in ecological restoration.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

Similar content being viewed by others

References

  • Anand M, Desrochers RE (2004) Quantification of restoration success using complex systems concepts and models. Restor Ecol 12:117–123

    Article  Google Scholar 

  • Anderson P (1995) Ecological restoration and creation: a review. Biol J Linn Soc 56(suppl.):187–211

    Article  Google Scholar 

  • Balloux F, Lugon-Moulin N (2002) The estimation of population differentiation with microsatellite markers. Mol Ecol 11:155–165

    Article  PubMed  Google Scholar 

  • Blakesley D, Pakkad G, James C, Torre F, Elliott S (2004) Genetic diversity of Castanopsis acuminatissima (Bl.) A. DC. in northern Thailand and the selection of seed trees for forest restoration. New Forest 27:89–100

    Article  Google Scholar 

  • Chen XY (1999) Population genetics considerations for ecological restoration. Resour Environ Yantze Basin 9:313–319

    CAS  Google Scholar 

  • Chen XY, Li YY, Wu TY, Zhang X, Lu HP (2003) Size-class differences in genetic structure of Metasequoia glyptostroboides Hu et Cheng (Taxodiaceae) plantations in Shanghai. Silvae Genet 52:107–109

    Google Scholar 

  • Chen XY, Song YC (1997) Mating system and inferred inbreeding depression of a Cyclobalanopsis glauca population in Diaoqiao, Huangshan. Acta Ecol Sin 17:462–468

    CAS  Google Scholar 

  • Chen XY, Wang XH, Song YC (1997) Genetic diversity and differentiation of Cyclobalanopsis glauca populations in East China. Acta Bot Sin 39:149–155

    Google Scholar 

  • Da LJ, Yang YC, Chen M (2004) The method of ecological greening and its application in the construction of the approaching nature plant community in Shanghai. J Chin Landscape Archit 4:38–40

    Google Scholar 

  • Dobson AP, Bradshaw AD, Baker AJM (1997) Restoration ecology and conservation biology. Science 277:515–522

    Article  CAS  Google Scholar 

  • Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11–15

    Google Scholar 

  • El-Kassaby YA (2000). Impacts of industrial forestry on genetic diversity of temperate forest trees. In: Matyas C (ed) Forest genetics and sustainability, V63. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp 155–169

    Google Scholar 

  • Fan XX, Shen L, Zhang X, Chen XY, Fu CX (2004) Assessing genetic diversity of Ginkgo biloba L (Ginkgoaceae) populations from China by RAPD markers. Biochem Genet 42:269–278

    Article  PubMed  CAS  Google Scholar 

  • Frankham R, Ballou JD, Briscoe DA (2002) Introduction to conservation genetics. Cambridge University Press, Cambridge

    Google Scholar 

  • Galeuchet DJ, Perret C, Fischer M (2005) Microsatellite variation and structure of 28 populations of the common wetland plant, Lychnis flos-cuculi L., in a fragmented landscape. Mol Ecol 14:991–1000

    Article  PubMed  CAS  Google Scholar 

  • Gil L, Fuentes-Utrilla P, Soto A, Cervera MT, Collada C (2004) English elm is a 2,000-year-old Roman clone. Nature 431:1053

    Article  PubMed  CAS  Google Scholar 

  • Glaubitz JC, Wu HX, Moran GF (2003) Impacts of silviculture on genetic diversity in the native forest species Eucalyptus sieberi. Conserv Genet 4:275–287

    Article  CAS  Google Scholar 

  • Gomory D (1992) Effects of stand origin on the genetic diversity of Norway spruce (Picea abies Karst.) populations. Forest Ecol Manage 54:215–223

    Article  Google Scholar 

  • Goto S, Tsuda Y, Nagafuji K, Uchiyama K, Takahashi Y, Tange T, Ide Y (2004) Genetic make-up and diversity of regenerated Betula maximowicziana Regel. sapling populations in scarified patches as revealed by microsatellite analysis. Forest Ecol Manage 203:273–282

    Article  Google Scholar 

  • Goudet J (1995) FSTAT (version 1.2): a computer program to calculate F-statistics. J Hered 86:485–486

    Google Scholar 

  • Gregorius H-R, Krauhausen J, Mueller-Starck G (1986) Spatial and temporal genetic differentiation among the seeds in a stand of Fagus sylvatica L. Heredity 57:255–262

    Article  Google Scholar 

  • Gugerli F, Sperisen C, Buchler U, Magni F, Geburek T, Jeandroz S, Senn J (2001) Haplotype variation in a mitochondrial tandem repeat of Norway spruce (Picea abies) populations suggests a serious founder effect during postglacial re-colonization of the western Alps. Mol Ecol 10:1255–1263

    Article  PubMed  CAS  Google Scholar 

  • Gustafson DJ, Gibson DJ, Nickrent DL (2004) Conservation genetics of two co-dominant grass species in an endangered grassland ecosystem. J Appl Ecol 41:389–397

    Article  CAS  Google Scholar 

  • Gustafsson S (2000) Patterns of genetic variation in Gymnadenia conopsea, the fragrant orchid. Mol Ecol 9:1863–1872

    Article  PubMed  CAS  Google Scholar 

  • Hamrick JL, Godt MJW (1989). Allozyme diversity in plant species. In: Brown AHD, Clegg MT, Kahler AL, Weir BS (eds) Plant population genetics, breeding, and genetic resources. Sinauer, Sunderland, Massachusetts, USA, pp 43–63

    Google Scholar 

  • Hollingsworth PM, Dawson IK, Goodall-Copestake WP, Richardson JE, Weber JC, Montes CS, Pennington RT (2005) Do farmers reduce genetic diversity when they domesticate tropical trees? A case study from Amazonia. Mol Ecol 14:497–501

    Article  PubMed  CAS  Google Scholar 

  • Hufford KM, Mazer SJ (2003) Plant ecotypes: genetic differentiation in the age of ecological restoration. TREE 18:147–155

    Google Scholar 

  • Isagi Y, Suhandono S (1997) PCR primers amplifying microsatellite loci of Quercus myrsinifolia Blume and their conservation between oak species. Mol Ecol 6:897–899

    Article  PubMed  CAS  Google Scholar 

  • Kelly BA, Hardy OJ, Bouvet J-M (2004) Temporal and spatial genetic structure in Vitellaria paradoxa (shea tree) in an agroforestry system in southern Mali. Mol Ecol 13:1231–1240

    Article  PubMed  CAS  Google Scholar 

  • Knowles P (1985) Comparison of isozyme variation among natural stands and plantations: jack pine and black spruce. Can J Forest Res 15:902–908

    Article  CAS  Google Scholar 

  • Krauss SL, Koch JM (2004) Rapid genetic delineation of provenance for plant community restoration. J Appl Ecol 41:1162–1173

    Article  Google Scholar 

  • Ledig FT (2000) Founder effects and the genetic structure of Coulter pine. J Hered 91:307–315

    Article  PubMed  CAS  Google Scholar 

  • Lesica P, Allendorf FW (1999) Ecological genetics and the restoration of plant communities: mix or match? Restor Ecol 7:42–50

    Article  Google Scholar 

  • Li YY, Chen XY, Zhang X, Wu TY, Lu HP, Cai YW (2005) Genetic differences between wild and artificial populations of Metasequoia glyptostroboides Hu et Cheng (Taxodiaceae): Implications for species recovery. Conserv Biol 19:224–231

    Article  Google Scholar 

  • Linhart YB, Mitton JB, Sturgeon KB, Davis ML (1981) Genetic variation in space and time in a ponderosa pine. Heredity 46:407–426

    Article  Google Scholar 

  • Litrico I, Ronfort J, Verlaque R, Thompson JD (2005) Spatial structure of genetic variation and primary succession in the pioneer tree species Antirhea borbonica on La Reunion. Mol Ecol 14:1575–1584

    Article  PubMed  CAS  Google Scholar 

  • Martin LM, Moloney KA, Wilsey BJ (2005) An assessment of grassland restoration success using species diversity components. J Appl Ecol 42:327–336

    Article  Google Scholar 

  • Miller MP (1997) Tools for population genetic analyses (TFPGA) v1.3: A windows program for the analysis of allozyme and molecular genetic data. Department of Biological Sciences, Northern Arizona University, Flagstaff

  • Miyawaki A (1993) Restoration of native forests from Japan to Malaysia. In: Lieth H, Lohmann M (eds) Restoration of tropical forest ecosystems. Kluwer Academic Publishers, Dordrecht, pp 5–24

    Google Scholar 

  • Miyawaki A (1998) Restoration of urban green environments based on the theories of vegetation ecology. Ecol Eng 11:157–165

    Article  Google Scholar 

  • Montalvo AM, Williams SL, Rice KJ, Buchmann SL, Cory C, Handel SN, Nabhan GP, Primack R, Robichaux RH (1997) Restoration biology: a population biology perspective. Restor Ecol 5:277–290

    Article  Google Scholar 

  • Morris AB, Baucom RS, Cruzan MB (2002) Stratified analysis of the soil seed bank in the cedar glade endemic Astragalus bibullatus: Evidence for historical changes in genetic structure. Am J Bot 89:29–36

    Article  Google Scholar 

  • Namkoong G, Boyle T, Gregorius HR, Joly H, Savolainen O, Ratman W, Young A (1996) Testing criteria and indicators for assessing the sustainability of forest management: genetic criteria and indicators. CIFOR Working Paper No. 10

  • Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583–590

    PubMed  Google Scholar 

  • Otero-Arnaiz A, Casas A, Hamrick JL, Cruse-Sanders J (2005) Genetic variation and evolution of Polaskia chichipe (Cactaceae) under domestication in the Tehuacan Valley, central Mexico. Mol Ecol 14:1603–1611

    Article  PubMed  CAS  Google Scholar 

  • Palmer MA, Bernhardt ES, Allan JD, Lake PS, Alexander G, Brooks S, Carr J, Clayton S, Dahm CN, Follstad Shah J, Galat DL, Loss SG, Goodwin P, Hart DD, Hassett B, Jenkinson R, Kondolf GM, Lave R, Meyer JL, O’donnell T.K, Pagano L, Sudduth E (2005) Standards for ecologically successful river restoration. J Appl Ecol 42:208–217

    Article  Google Scholar 

  • Piry S, Alapetite A, Cornuet J-M, Paetkau D, Baudouin L, Estoup A (2004) GENECLASS2: A software for genetic assignment and first-generation migrant detection. J Hered 95:536–539

    Article  PubMed  CAS  Google Scholar 

  • Rajora OP (1999) Genetic biodiversity impacts of silvicultural practices and phenotypic selection in white spruce. Theor Appl Genet 99:954–961

    Article  CAS  Google Scholar 

  • Ratnam W, Lee CT, Muhammad N, Boyle TJB (2000) Impact of logging on genetic diversity in humid tropical forests. In: Matyas C (eds) Forest genetics and sustainability, vol 63. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp 171–181

    Google Scholar 

  • Reusch TBH, Ehlers A, Hammerli A, Worm B (2005) Ecosystem recovery after climatic extremes enhanced by genotypic diversity. PNAS 102:2826–2831

    Article  PubMed  CAS  Google Scholar 

  • Slatkin M (1995) A measure of population subdivision based on microsatellite allele frequencies. Genetics 139:457–462

    PubMed  CAS  Google Scholar 

  • Song YC (2001) Vegetation ecology. East China Normal University Press, Shanghai

    Google Scholar 

  • Stoehr MU, El-Kassaby YA (1997) Levels of genetic diversity at different stages of the domestication cycle of interior spruce in British Columbia. Theor Appl Genet 94:83–90

    Article  Google Scholar 

  • Thomas BR, Macdonald SE, Hicks M, Adams DL, Hodgetts RB (1999) Effects of reforestation methods on genetic diversity of lodgepole pine: an assessment using microsatellite and randomly amplified polymorphic DNA markers. Theor Appl Genet 98:793–801

    Article  Google Scholar 

  • Travis SE, Proffitt CE, Lowenfeld RC, Mitchell TW (2002) A comparative assessment of genetic diversity among differently-aged populations of Spartina alterniflora on restored versus natural wetlands. Restor Ecol 10:37–42

    Article  Google Scholar 

  • Tucker NIJ, Murphy TM (1997) The effects of ecological rehabilitation on vegetation recruitment: some observations from the Wet Tropics of North Queensland. Forest Ecol Manage 99:133–152

    Article  Google Scholar 

  • Tuxen R (1956) Die huetige potentielle naturliche Vegetation als Gegestand der Vegetationskarierung. Angew Pflanz 13:5–42

    Google Scholar 

  • Ueno S, Tomaru N, Yoshimaru H, Manabe T, Yamamoto S (2002) Size-class differences in genetic structure and individual distribution of Camellia japonica L. in a Japanese old-growth evergreen forest. Heredity 89:120–126

    Article  PubMed  CAS  Google Scholar 

  • Ueno S, Yoshimaru H, Kawahara T, Yamamoto S (2000) Isolation of microsatellite markers in Castanopsis cuspidata var. sieboldii Nakai from an enriched library. Mol Ecol 9:1188–1190

    PubMed  CAS  Google Scholar 

  • Urbanska K, Webb N, Edwards P (1997) Restoration ecology and sustainable development. Cambridge University Press, Cambridge

    Google Scholar 

  • Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538

    Article  Google Scholar 

  • Van Rossum F, De Sousa SC, Triest L (2004) Genetic consequences of habitat fragmentation in an agricultural landscape on the common Primula veris, and comparison with its rare congener, P. vulgaris. Conserv Genet 5:231–245

    Article  Google Scholar 

  • Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358–1370

    Article  Google Scholar 

  • Williams SL, Davis CA (1996) Population genetic analyses of transplanted eelgrass (Zostera marina) reveal reduced genetic diversity in southern California. Restor Ecol 4:163–180

    Article  Google Scholar 

  • Williams SL, Orth RJ (1998) Genetic diversity and structure of natural and transplanted eelgrass populations in the Chesapeake and Chincoteague Bays. Estuaries 21:118–128

    Article  Google Scholar 

  • Wu ZY (1980) Vegetation of China. Science Press, Beijing

    Google Scholar 

  • Young AG, Brown AHD, Zich FA (1999) Genetic structure of fragmented populations of the endangered daisy Rutidosis leptorrhynchoides. Conserv Biol 13:256–265

    Article  Google Scholar 

Download references

Acknowledgments

We thank Xin-Sheng Hu, E. Witkowski, and an anonymous reviewer for critical comments on the earlier version of the manuscript and J. P. Sniadecki of Harvard University for English improvement. We thank Xi-Hua Wang for providing detail information about the donor population and Liang-Jun Da for suggestions on the restored populations. The study was supported by the National Scientific Foundation of China (30130060), Program for New Century Excellent Talents in University (NCET-05-0431) and Heshan Hilly Interdisciplinary Experimental Station Research Foundation to Xiao-Yong Chen and Ph.D Program Scholarship Fund of ECNU 2006 to Mei-Hua Liu.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Xiao-Yong Chen.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Liu, MH., Chen, XY., Zhang, X. et al. A population genetic evaluation of ecological restoration with the case study on Cyclobalanopsis myrsinaefolia (Fagaceae). Plant Ecol 197, 31–41 (2008). https://doi.org/10.1007/s11258-007-9357-y

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11258-007-9357-y

Keywords

Navigation